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December 2003 Table of Contents

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December 2003

High-capacity, low-noise microarray slides.
Almost since the inception of the technology, two trouble spots for microarray slides have been autofluorescence and low DNA-binding capacity. To address these problems, Schott Nexterion, a member of the Schott Group, has utilized its expertise in glass production to develop and market Nexterion Slide A.

High-capacity, low-noise microarray slides

The new slide was developed with a chemically durable borosilicate glass that is particularly suited for use in microarray slides, as it exhibits low autofluorescence at the Cy3 and Cy5 fluorescent probe excitation wavelengths. As a result of the low autofluorescence of the glass substrate, the sensitivity of a microarray assay is essentially enhanced.

To improve the DNA-binding capacity of the slides, Schott Nexterion designers engineered a multifunctional aminosilane coating that provides a higher positive surface charge at pH values typical for common spotting solutions like SSC and phosphate buffer (pH 7.0–8.5), compared with conventional monofunctional aminosilane slides. The improved binding capacity, together with the low autofluorescence of the slides, makes high signal-to-noise ratios achievable. The slides exhibit a better spot morphology and enable highly reproducible test results.

Schott Nexterion slides are checked for both intraslide and batch-to-batch consistency and are laser-cut to provide smooth edges with exact tolerances, greatly reducing the risk of contamination by glass particles. Furthermore, the slide dimensions are compatible with all commonly used microarray printers and scanners.

Schott Nexterion
www.schott.com/nexterion

Slides and plates. The 16-well ArrayCote Slide (above) and the 96-well ArrayCote Plate provide efficient analysis of multiple samples or conditions on a single, standard-sized sample format. Applications include nucleic acids, proteins, cell and tissue arrays, time- and dose-response assays, and gene expression analysis. The slides and plates are made of high-quality glass with secure lids; available surface treatments are aminosilane, aldehyde, and epoxy.

Slides and plates

Nalge Nunc International - www.nuncbrand.com


RNA amplification. Designed to produce sense-strand RNA for use in expression, structural, or functional studies, the BD SMART mRNA Amplification Kit provides a method of maintaining the relative abundance of gene transcripts. The kit ensures optimal results by enriching for full-length transcripts, and routinely produces yields of 10–50 µg from a single round of amplification.

RNA amplification

BD Biosciences Clontech - www.bdbiosciences.com


Pipet tips. For use with the Tecan Genesis and PerkinElmer/Packard Multiprobe II HT workstations, Tecan Clear tips are available in three varieties: sterile, nonsterile, and with the patented ART filter. The tips allow researchers to visually check sample aspiration and dispensing without resorting to expensive liquid-sensing technologies.
Molecular BioProducts - www.mbpinc.com

Hot website. Offering detailed product information, technical articles and papers, infrared and emissivity fundamentals, blackbody theory, and news events, this temperature measurement website is informative for both industry and laboratory users. The site offers detailed specifications for the company’s complete line of thermometers and pyrometers, as well as an emissivity calculator to help IR users understand the impact of errors on temperature measurements.
Pyrometer Instrument Co. - www.pyrometer.com

Mixers. Useful for heating and chilling biological and other samples, EcoTherm Models SC20 and SC25 mixers are Peltier-controlled for temperatures from –10 to 100 °C and incorporate variable-speed mixing from 200 to 1000 rpm. Similarly, both models accommodate sample blocks for different-sized centrifuge tubes, vials, and PCR tubes and plates.
Torrey Pines Scientific - www.torreypinesscientific.com

Spectrometer. The HR-US 102 model has an extended frequency range, enhanced user control system, and digitally controlled stirring system. It is ideal for measuring a wide variety of liquid systems, from dilute solutions to concentrated emulsions. It can be used to monitor processes such as molecular structural changes, thermal transitions, chemical reactions, aggregation formation, and crystallization. The digitally controlled stirring system allows for titrations to monitor binding reactions or concentration dependence.
Ultrasonic Scientific - www.ultrasonic-scientific.com

Brochure. This six-page color publication describes Harris Platinum SI Series –85 °C ultralow-temperature freezers, which accommodate up to 30% more inventory than conventional freezers of an equivalent size. Advanced composite thin-wall Super Insulation enables the 32 cu ft (906 L) ultralow freezer to hold up to 700 (2 in.) fiberboard boxes, while the 24.4 cu ft (691 L) model holds up to 480 (2 in.) sample boxes. Comprehensive system displays and easy-to-use touchpad controls are conveniently mounted on the freezer door.
Kendro Laboratory Products - www.kendro.com

Image analyzerImage analyzer. GeneFlash integrates a benchtop darkroom with a digital camera, flash card technology, and color LCD screen. The unit can be coupled with GeneGnome HR, a high-resolution, chemiluminescent image analyzer, using chip technology, and with either the GeneGenius Super12 high-resolution gel documentation system or the ChemiGenius2 analyzer for fluorescent and chemiluminescent applications. The compact system with built-in transilluminator software provides instant image capture and analysis.
Syngene - www.syngene.com

ELISA protein. Secreted mouse protein, Adiponectin Quantikine ELISA (MRP300), is an adipocyte complement-related protein of 30 kDa (Acrp30). The assay has a dynamic range of 0.16–10 ng/mL; is fully validated for serum, plasma, tissue homogenates, and cell culture supernatants; and has a sensitivity of 0.003 ng/mL.
R&D systems - www.RnDSystems.com

Perchloric acid bookPerchloric acid book. The second edition of Perchloric Acid & Perchlorates, by A. A. Schilt, critically examines perchlorate toxicology and how public policy and regulatory guidelines are currently determined. The book contains applications for perchlorate salts and includes their role in the promotion of a wide range of synthetic organic methodologies.
GFS Chemicals - www.gfschemicals.com

Reagent system. Pronto Plus is equipped with slide processing that allows self-printing microarrays for gene expression analysis. The system provides scientists with the ability to control variables in microarray fabrication and experimental processing. It utilizes microarray glass surface chemistry, printing, and hybridization for nucleic acid purification, fluorescent labeling, and cleanup.
Promega Corp. - www.prontosystems.com

Synthesis systemSynthesis system. EasyXpress is a complete system for delivering recombinant protein from a gene within a single day. Using a two-step PCR procedure, the system adds affinity-tag coding sequences to products from the first-round of PCR. EasyXpress is available in a minikit capable of producing up to 30 µg of protein from 20 x 50 µL reactions, and a maxikit for reactions up to 4 mL.
Qiagen - www.qiagen.com

Polymer slides. Black Polymer NucleoLink Slides feature a unique surface designed for nucleic acid arrays, and Black Polymer MaxiSorp Slides have a charged surface optimized for proteins. With dimensions identical to glass slides, these polymer slides can be used with standard array printing. In addition, the polypropylene mBox holds 20 slides for easier processing, transport, and storage.
Nalge Nunc International - www.nuncbrand.com

Filter plateFilter plate. This multiscreen solubility filter plate is an automation-compatible, 96-well system designed for quantitative solubility assays. The filtration-based protocol has been validated to screen hundreds of samples per day with results that correlate to shake flask methods. It gives reproducible results in less than 4 h. The plates incorporate low-binding membrane and plate materials to yield high drug recovery.
Millipore - www.millipore.com


StandardsStandards. The In-Spec Optical Photometric Standards are for instrument calibration verification, are NIST-traceable, and can be used to validate calibration and determine linear accuracy in the UV range of 225–450 nm. These ready-to-use, nontoxic liquids provide stable readings for a full year and require no special handling or storage. Each standard can be customized to different specifications.
GFS Chemicals - www.gfschemicals.com

Enclosure. The BioPROtect Jr., a smaller version of BioPROtect II, is a compact, walk-in, Class II-style clean air and containment enclosure designed for high-volume robotic and automated-equipment applications. It accommodates high-throughput robotic systems (including ancillary devices), ultracentrifuges, flow cytometers, aerosol generators, and other laboratory equipment. It has an 87 cu ft interior volume (nominal) and is ideal for applications such as high-throughput screening, combinatorial chemistry, drug discovery, immunology, tissue culture, clinical research, molecular biology, and quality control assays.
The Baker Company - www.bakerco.com

Pipet tips. REACH tips add a layer of security in protecting samples and pipettors by preventing the pipettor’s shaft from touching the inside of the sample vessel, thus virtually eliminating the chance of carryover contamination and the need to clean or replace pipettors. Assays remain pure, saving time and effort. They are nearly 5 in. long, twice the length of regular 1-mL pipet tips, and are designed to reach the bottom of 15- and 50-mL centrifuge tubes and other deep sample vessels.
Molecular BioProducts - www.mbpinc.com

Pump systemPump system. Without flow splitting, the 1D NanoLC System monitors system and independent solvent channel pressure. Automated peak parking lowers flow rate rapidly during a gradient, effectively eliminating previously complex approaches. This system can achieve higher solvent-to-sample ratios at lower flow rates, resulting in more samples being analyzed by mass spectrometry.
LEAP Technologies - www.leaptec.com


Delivery systemDelivery system. The comPANION remote system complements the scalable comPOUND microtube storage system. comPANION provides remote delivery of cherry-picked microtubes to any location up to 15 m away from compound. It can generate a rack of 96 microtubes individually selected from comPOUND’s 100,000-tube store in about 9 min, processing over 5000 tubes in a day. Racks prepared by comPANION can be fed directly into a liquid handler, and then rapidly stored for later use.
TTP LabTech - www.ttplabtech.com

Assay kit. The Easy-Titer Human IgM kit incorporates a mix-and-read protocol for accurate determination of IgM concentrations from 15 to 500 ng/mL in 30 min. The three-component kit uses a microplate, shaker, and microplate reader and is aggregation-based. The values are inversely proportional and a standard curve can quantify IgM levels in a variety of samples.
Pierce Biotechnology - www.piercenet.com

Biotinylated lipids. Echelon offers all eight biotinylated phosphoinositides and a biotinylated sphingosine. These products can be used in various assays and protein pulldown experiments. They are available as solids or attached to streptavidin-coated plates or beads.
Echelon Biosciences - www.echelon-inc.com

Catalog. PharmaCore, a leader in the development of molecular building blocks for small-molecule drug discovery, offers novel druglike compounds that can add a unique element to a research program and enhance the probability of successful drug discovery. PharmaCore’s services provide advantages in lead optimization, discovery, custom chemical synthesis, and cGMP scale-up. To request a 2003 catalog, visit the company’s website.
PharmaCore - www.pharmacore.com

Tube rack. The 0.75-mL Latch Rack system features a unique locking lid that can be opened on hinges, lifted off robotically, or locked down. The rack accommodates 0.75-mL tubes that are available blank, with alphanumeric identifiers, or with permanently attached 2D bar codes. The rack also features an industry-standard footprint and an open bottom for easy tube and sample identification and rapid freezing and thawing.
Matrix Technologies - www.matrixtechcorp.com

Protein vectorsProtein vectors. Nonprofit and academic customers can obtain a complete set of reef coral fluorescent proteins (RCFPs). These bacterial and mammalian expression vectors encode AmCyan, Zs Green, ZsYellow, DsRed, and AsRed. The proteins are adapted for use as in vivo reporters by introducing a series of mutations into the corresponding full-length cDNAs to produce RCFPs with higher solubility, brighter emission, and faster chromophore maturation. Human-codon-optimized versions of each cDNA have been created to enhance translation efficiency in mammalian cells.
BD Biosciences Clontech - www.bdbioscience.com

Modeling software. Glasses-free stereoscopic 3D visualization of molecular models in real time is enabled by the integration of CAChe software with Dynamic Digital Depth’s TriDef 3D Display software and Sharp’s new RD3D laptop computer. In addition, the optional TriDef Transformer application enables users to convert photos, images from CAChe, and PowerPoint slideshows into full 3D-stereoscopic images for viewing on a laptop, and the TriDef Player enables specially processed movies to be viewed in 3D stereo.
CAChe Group - www.cachesoftware.com

Lab report. The technical report “Set ting Tolerances for Pipette Performance” offers guidelines for setting up appropriate tolerance limits for precision and accuracy and how to fine-tune them to suit laboratory requirements. A table with suggested initial tolerance limits for pipets with volumes ranging from 1 to 5000 µL is included.
Artel - www.artel-usa.com

Liquid-handling system. The MultiProbe II Plus features flexible 4- or 8-tip pipetting into tubes, vials, or microplates; 16- or 32-microplate tile capacity; and VersaTip PLUS to enable switching between fixed and disposable tips in any assay. The system can be fully integrated with PerkinElmer’s Evolution P3 benchtop system for 96- and 384-tip pipetting.
PerkinElmer - www.perkinelmer.com

Well plates. These fluorescence reference standards contain a stable inorganic standard that can rapidly check the accuracy of the wavelength, uniformity, and intensity measurements of your fluorescent microplate reader. Each plate includes an inorganic phosphor that absorbs light at one wavelength and emits light at another.
Matech Advanced Materials - www.matech.us


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